Nature Methods

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  1. Journal Article (19)
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  • Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision
    Journal Article

    Vromman, M.; Anckaert, J.; Bortoluzzi, S.; Buratin, A.; Chen, C. Y.; Chu, Q.; Chuang, T. J.; Dehghannasiri, R.; Dieterich, C.; Dong, X.; more...
    Nature Methods (2023)

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  • CellRank for directed single-cell fate mapping
    Journal Article

    Lange, M.; Bergen, V.; Klein, M.; Setty, M.; Reuter, B.; Bakhti, M.; Lickert, H.; Ansari, M.; Schniering, J.; Schiller, H. B.; more...
    Nature Methods (2022)

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  • Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling
    Journal Article

    Zhang, A. W.; O'Flanagan, C.; Chavez, E. A.; Lim, J. L. P.; Ceglia, N.; McPherson, A.; Wiens, M.; Walters, P.; Chan, T.; Hewitson, B.; more...
    Nature Methods (2019)

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  • BindSpace decodes transcription factor binding signals by large-scale sequence embedding
    Journal Article

    Yuan, H.; Kshirsagar, M.; Zamparo, L.; Lu, Y.; Leslie, C. S.
    Nature Methods (2019)

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  • Protein structure determination by combining sparse NMR data with evolutionary couplings
    Journal Article

    Tang, Y.; Huang, Y. J.; Hopf, T. A.; Sander, C.; Marks, D. S.; Montelione, G. T.
    Nature Methods (2015)

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  • Pathway and network analysis of cancer genomes
    Journal Article

    Creixell, P.; Reimand, J.; Haider, S.; Wu, G.; Shibata, T.; Vazquez, M.; Mustonen, V.; Gonzalez-Perez, A.; Pearson, J.; Sander, C.; more...
    Nature Methods (2015)

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  • KinomeXplorer: An integrated platform for kinome biology studies
    Journal Article

    Horn, H.; Schoof, E. M.; Kim, J.; Robin, X.; Miller, M. L.; Diella, F.; Palma, A.; Cesareni, G.; Jensen, L. J.; Linding, R.
    Nature Methods (2014)

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  • Assessment of transcript reconstruction methods for RNA-seq
    Journal Article

    Steijger, T.; Abril, J. F.; Engström, P. G.; Kokocinski, F.; Akerman, M.; Alioto, T.; Ambrosini, G.; Antonarakis, S. E.; Behr, J.; Bertone, P.; more...
    Nature Methods (2013)

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  • Systematic evaluation of spliced alignment programs for RNA-seq data
    Journal Article

    Engström, P. G.; Steijger, T.; Sipos, B.; Grant, G. R.; Kahles, A.; Rätsch, G.; Goldman, N.; Hubbard, T. J.; Harrow, J.; Guigó, R.; more...
    Nature Methods (2013)

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  • Computational approaches to identify functional genetic variants in cancer genomes
    Journal Article

    Gonzalez-Perez, A.; Mustonen, V.; Reva, B.; Ritchie, G. R. S.; Creixell, P.; Karchin, R.; Vazquez, M.; Fink, J. L.; Kassahn, K. S.; Pearson, J. V.; more...
    Nature Methods (2013)

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    • Nature Methods – authorized name for:

    Name ISSN / ISBN Publisher
    Nature Methods 15487105 Unknown
    Nature Methods 1548-7091 Nature Publishing Group
    Nature Methods 1548-7091 Unknown
    Nature Methods 15487091 Unknown
    Nature Methods 1548-7091 Nature Publishing Group
    Nature Methods 15487091 2019, The Author(s), Under Exclusive Licence To Springer Nature America, Inc
    Nature Methods 15487091 2020, The Author(s), Under Exclusive Licence To Springer Nature America, Inc
    Nature Methods 1548-7091 Nature Research
    Nature Methods 15487091 2021, Springer Nature America, Inc
    Nature Methods 15487105 Nature America, Inc
    Nature Methods 1548-7091 Nature Portfolio
    Nature Methods 15487091 2023, The Author(s), Under Exclusive Licence To Springer Nature America, Inc
    Nature Methods 15487091 2022, The Author(s)
    Nature Methods 15487091 Nature America, Inc